PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00102.17
Common NameAMTR_s00102p00046460
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 249aa    MW: 27688.2 Da    PI: 4.7959
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00102.17genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-1093135855
                                              HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               ErrRR  +N+++  Lr+l+P+      +K++Ka+i+  Av Y+ +Lq
  evm_27.model.AmTr_v1.0_scaffold00102.17  93 SERRRRGTLNERLYALRTLVPNI-----TKMDKASIVGDAVIYVEKLQ 135
                                              6*********************7.....7*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.78685134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-1487152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.17E-1287139No hitNo description
SuperFamilySSF474592.75E-1587152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1391140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-893135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEGYGGTTME SFENVLNPLL TEDNGESFAC QTFSIEMFSA PSFGALFDLD YGSSSSFKGG  60
EMNPPSFLFE EERGTVESSA LISSCDRSKT LSSERRRRGT LNERLYALRT LVPNITKMDK  120
ASIVGDAVIY VEKLQREARE LRKEIAILES TMQREGGGQA SYNKNTSSSY TIKHHPKAQS  180
LCRKILQVDE NGFYVTMICE KSEGVLAATW ETLESLSCFY LLSSNFATPS PERTLITFTL  240
QVISLNQY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621304.11e-177transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLW1P0N40.0W1P0N4_AMBTC; Uncharacterized protein
STRINGERN005150.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP72711118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.19e-48FER-like regulator of iron uptake
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]