PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00102.35

Common Name

AMTR_s00102p00073930, LOC18428585

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

C2H2

Protein Properties

Length: 236aa MW: 24937.6 Da PI: 7.7806

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00102.35	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sFs+ L H +H evm_27.model.AmTr_v1.0_scaffold00102.35 87 YECKTCNRSFSSFQALGGHRASH 109 99**********99999998887 PP
2	zf-C2H2	11.7	0.00081	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F + L H+r+H evm_27.model.AmTr_v1.0_scaffold00102.35 154 HECSVCGSEFASGQALGGHMRRH 176 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.16E-9	87	109	No hit	No description
PROSITE profile	PS50157	11.053	87	114	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.0E-12	87	111	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.072	87	109	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.16E-9	149	176	No hit	No description
Pfam	PF13912	2.2E-11	153	177	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.619	154	176	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.036	154	176	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	156	176	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MEGTEAPHCA VKGKRTKRQR HHLQHAPTPS SPASLSLSSS STDLSLSLSS TTTDEEEDMA 60 NCLILLAQGP NHPPSRKSTA TNKSGSYECK TCNRSFSSFQ ALGGHRASHK KPRATDEGHV 120 SCYFDCAGAP SLSTSTKIEE GKGENNGNSK GRVHECSVCG SEFASGQALG GHMRRHRLAP 180 LSEPTVKKGA LGLDLNLPAP EDETDNYAKF QGVFGGGFVQ SQPLVSFAAL VDCHN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006837964.1	1e-174	zinc finger protein ZAT5
Swissprot	Q681X4	8e-43	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	W1NY00	1e-172	W1NY00_AMBTC; Uncharacterized protein
STRING	ERN00533	1e-173	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP131	15	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	3e-38	C2H2 family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00102.35
Entrez Gene	18428585

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]