PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00105.24
Common NameAMTR_s00105p00052770
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 165aa    MW: 18545.9 Da    PI: 6.7322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00105.24genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00126080323
                                             ETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                             C+ C k+F++ + L  H+ tH
  evm_27.model.AmTr_v1.0_scaffold00105.24 60 CKPCYKVFPSCEALSGHMTTH 80
                                             888****************99 PP
2zf-C2H212.40.00046141162223
                                              EETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                              +C++C+ +F + ++L  H+ +H
  evm_27.model.AmTr_v1.0_scaffold00105.24 141 ECKYCHLVFETFHELDGHMALH 162
                                              5******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-65780No hitNo description
SMARTSM003557.45880IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-56080IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-6135162No hitNo description
SMARTSM003551.9140162IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-5140163IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MTPPHSPPYH PHFRCKVFYK IFRITGKQLS APMTVDHKEK NTTSSLFSPS RENLKKLNVC  60
KPCYKVFPSC EALSGHMTTH GEQVGSIMIQ EKVKDNEAAI EEEEGNKTTH SDLGGSIMNQ  120
EKGKDNEAAI EEEGKDGGER ECKYCHLVFE TFHELDGHMA LHRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1NXG51e-119W1NXG5_AMBTC; Uncharacterized protein
STRINGERN000341e-120(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.14e-06C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]