PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00106.93
Common NameAMTR_s00106p00121490
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 193aa    MW: 21435.8 Da    PI: 8.4984
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00106.93genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001110132123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              ++C+ C+ksF++   L  H   H
  evm_27.model.AmTr_v1.0_scaffold00106.93 110 HRCNLCSKSFTSGQALGGHRTIH 132
                                              79*********999888887666 PP
2zf-C2H214.97.8e-05154175122
                                              EEETTTTEEESSHHHHHHHHHH CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                                              y+C  C k+F+++  L  H+  
  evm_27.model.AmTr_v1.0_scaffold00106.93 154 YECRVCRKRFKSSQALGGHMGA 175
                                              99**************999965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.18110132IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.56E-10110176No hitNo description
PROSITE profilePS501579.785110132IPR007087Zinc finger, C2H2
PfamPF139121.1E-9110134IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-5141176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.619154181IPR007087Zinc finger, C2H2
SMARTSM003550.047154176IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-7154177IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDSEPLSLTL SLSPYQPSPT TIHPLFSSLS LPLYQDNGTI STTLLSVPQQ DSSHPSLISY  60
SSTSKQYSDN HAQDLEDVAE HSFVTRDFGN GHTKDLQNSS NHVQDFSNCH RCNLCSKSFT  120
SGQALGGHRT IHREVLSKMN SKEKKRERNG ERFYECRVCR KRFKSSQALG GHMGAHRLPT  180
EGSSSKSFLV FL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1P1C81e-139W1P1C8_AMBTC; Uncharacterized protein
STRINGERN007451e-140(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.13e-13C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]