PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00106.94
Common NameAMTR_s00106p00123580
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 221aa    MW: 24437 Da    PI: 6.8716
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00106.94genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003136158123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              ++C  C+ksF++   L  H+  H
  evm_27.model.AmTr_v1.0_scaffold00106.94 136 HRCDLCSKSFTSGQALGGHMTIH 158
                                              79*****************9988 PP
2zf-C2H213.70.00019180201122
                                              EEETTTTEEESSHHHHHHHHHH CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                                              y+C  C+k+F+++  L  H+  
  evm_27.model.AmTr_v1.0_scaffold00106.94 180 YECMVCKKRFKSSQALGGHMGA 201
                                              99**************999965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-9136202No hitNo description
SMARTSM003550.022136158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-4136159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.8E-11136160IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596136163IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-6166204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.033180202IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-7180202IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014180207IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MARPCSYNSH GLADPLDLED HLCSDQPIEP LSLTLSLSPY QPNPTTTTIH HLSSYQDNRT  60
ASQPISTSLT LSVPQHDSSY LSLSTCSSTC EQYSGNHTQD LEDVGERNPI THDFGIGDTQ  120
DSQNSNNHVQ EFSNGHRCDL CSKSFTSGQA LGGHMTIHRK VLPKMHSKEK KRESNGERFY  180
ECMVCKKRFK SSQALGGHMG AHTSPFNTEA SSPKRFFTFL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1NZM01e-162W1NZM0_AMBTC; Uncharacterized protein
STRINGERN007461e-163(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-13C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]