PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00106.97
Common NameAMTR_s00106p00127480, LOC18428821
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 488aa    MW: 52149 Da    PI: 7.8951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00106.97genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.2e-15308354455
                                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               h++ Er+RRdriN+++  L++l+P++      K +Ka++L +++eY+k+Lq
  evm_27.model.AmTr_v1.0_scaffold00106.97 308 VHSQSERKRRDRINQKMKALQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 354
                                              5999**********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-18302367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-17302364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.46304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-13308354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-15309358No hitNo description
SMARTSM003532.5E-17310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MSQCVPSWDL KSKLGLHVDE DDFQNLYDPL LESDYQVAEL TWENGHLTMH GLGPPKPPIK  60
PVQRCTWEKP QSGGGGGGGS GGSGGGGGGG SGGGGGGGGG GGGTLECVVN QAKRASHGTL  120
VTVEEPTTLA PWSVDALVPC SDPKGPARAC AIDHASATCA NVPAVPGLTP SQRGPGTCVA  180
SCSYPNIVPS HFQTLLKADE GTSKRKRARS MHVCEPMYTR VSGQGIDDSK NRSMRMGTCE  240
RSFDLGLAST SMGSQDKTSS ARRLATEDHD SASHSRPQRE DDGEHDEKRK CQGERSSVST  300
KRSRAAAVHS QSERKRRDRI NQKMKALQKL VPNSSKTDKA SMLDEVIEYL KQLQAQVHMI  360
SRMNMSQMMM PITMQQLQMA MMAQMGMGMS MGMGMGMGMD INSAMRPAAI PNGMPPIIHP  420
AFLPFPMSWD NSGDRLPASG NVMEDPFSAF LACHPQSMTM DAYGKMAALY QHLHQQQTPP  480
NTSVSRD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190103SGGGGGGGGGGGGT
2312317ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838180.10.0transcription factor UNE10 isoform X1
TrEMBLW1NZH10.0W1NZH1_AMBTC; Uncharacterized protein
STRINGERN007490.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP80031014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-62bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]