PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00111.125
Common NameAMTR_s00111p00144160, LOC18428307
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 373aa    MW: 41359.4 Da    PI: 6.6627
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00111.125genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.2e-08111135126
                                               --S---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                               +kt+lC+ f++ GtC+y  +C+FaHg
  evm_27.model.AmTr_v1.0_scaffold00111.125 111 FKTKLCCKFRA-GTCPYITNCNFAHG 135
                                               69*********.*************8 PP
2zf-CCCH44.13.4e-14246271126
                                               --S---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                               +kt++C+ +  tG+C++G++C+FaHg
  evm_27.model.AmTr_v1.0_scaffold00111.125 246 WKTRICNKWETTGYCPFGSKCHFAHG 271
                                               8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.36E-8107141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-14108143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.953110137IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037110136IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5111135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-7182211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-8182211IPR000571Zinc finger, CCCH-type
SMARTSM003560.11183210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685183211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-17241275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-10242276IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-9245272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478245273IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-11246271IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDYGNESIFH DKSGQTVIEI QANSDCWIPG VNDQGIWATD DDYGAWNGDQ DTISNPNFSE  60
PPQKRSRNPN TDPQNNGFIR DRNPNFSNNQ GNNVAEFTSL NRSKVIGKMF FKTKLCCKFR  120
AGTCPYITNC NFAHGIEELR KPPPNWQEIV AAQEDDRTQI IEREEHQIPS ISSTGLGGES  180
QRSYKGRHCK KFYTEEGCPY GDMCTFLHDE QSKARESVAI SLGPTGNGGG YGGGGGNGSN  240
QKPSNWKTRI CNKWETTGYC PFGSKCHFAH GLGELHRYGG GLVEMEGRDS STVPSDSKIN  300
TASSKVQTDA VTGSMASIPH MDTYHVGLQS QRSVSSLNQR QGLKPFQKWK GPDKISRIYG  360
DWIDDNEWES SR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020519258.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-125C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLW1NZZ30.0W1NZZ3_AMBTC; Uncharacterized protein
STRINGERN002600.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-119C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]