PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00114.66
Common NameAMTR_s00114p00142630, LOC18426971
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 243aa    MW: 27304.7 Da    PI: 7.6306
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00114.66genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.52e-319102193
                                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
                                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 
                                              f+k ltpsdv+k++rlv+pk++ae++    + ++e++  l +ed sg+ W+++++y+++s++yvltkGW+
  evm_27.model.AmTr_v1.0_scaffold00114.66   9 FDKPLTPSDVGKLNRLVIPKQHAEKYfpldQTSNEKGLLLGFEDNSGKPWRFRYSYWNSSQSYVLTKGWS 78 
                                              89***************************966677899******************************** PP

                                              HHHHHHT--TT-EEEEEE-SSSEE..E CS
                                       B3  67 eFvkangLkegDfvvFkldgrsefelv 93 
                                              +Fvk+++L++gD+v F+   r++++l+
  evm_27.model.AmTr_v1.0_scaffold00114.66  79 RFVKEKQLCAGDIVSFS---RHSGKLF 102
                                              *****************...4455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-413107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-305110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-24796No hitNo description
SMARTSM010196.3E-229108IPR003340B3 DNA binding domain
PfamPF023621.5E-279103IPR003340B3 DNA binding domain
PROSITE profilePS5086314.1289109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEEEREHMFD KPLTPSDVGK LNRLVIPKQH AEKYFPLDQT SNEKGLLLGF EDNSGKPWRF  60
RYSYWNSSQS YVLTKGWSRF VKEKQLCAGD IVSFSRHSGK LFIAFKHRAN LSPQIPLWHR  120
NLNNIHATSS INGADSIDNG GVGYNYNGVL WCSRPNGSLY YVRVPSHGGE MSSGNGVKRV  180
RLFGVDLECP EVEETDSVGV TGAWPAPQLF SNVGLVPRAP LEREREQTIS FDLEQMPGSQ  240
WG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-5341083113B3 domain-containing transcription factor NGA1
5os9_B9e-5341083113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006836093.10.0B3 domain-containing transcription factor NGA1
SwissprotO827991e-54NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLW1NPW31e-180W1NPW3_AMBTC; Uncharacterized protein
STRINGERM989460.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-53B3 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  4. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  5. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  6. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  7. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]