PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00116.30
Common NameAMTR_s00116p00124910
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22528.6 Da    PI: 5.6143
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00116.30genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.38.3e-1812491350
                                             HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                                   SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                             f  R++gi KKA+ELS+LC ++v+vi f+++g+l +++
  evm_27.model.AmTr_v1.0_scaffold00116.30 12 FKMRLKGIKKKASELSTLCTIDVCVICFGPNGELETWP 49
                                             888**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.001150IPR002100Transcription factor, MADS-box
CDDcd002661.55E-15662No hitNo description
SuperFamilySSF554555.23E-15981IPR002100Transcription factor, MADS-box
PfamPF003191.3E-141048IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.471252IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGRLPSSNSN RFKMRLKGIK KKASELSTLC TIDVCVICFG PNGELETWPE DQSTHMPVFE  60
RCIILAKSNW SKRKIDAYST LEAQIDKLSR DLVRKHQEIN ECLHFLNDSY LGVHSSESPQ  120
SMLASLDMEI DKASARLITE TVKPLDETDF VGLDDIVKLN GFDNFNGGDV HTLPLQLLQE  180
DDFLRSHQWL VGGPSSRLY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020517847.11e-147agamous-like MADS-box protein AGL75
TrEMBLW1NSG31e-146W1NSG3_AMBTC; Uncharacterized protein
STRINGERM977891e-147(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1580123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.12e-14AGAMOUS-like 103
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]