PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00117.3
Common NameAMTR_s00117p00021640
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 220aa    MW: 24859.1 Da    PI: 10.182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00117.3genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00079110131223
                                             EETTTTEEESSHHHHHHHHHHT CS
                                 zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                             +C  C+k F +  +L  H+r H
  evm_27.model.AmTr_v1.0_scaffold00117.3 110 VCAMCKKKFHSMKSLFGHMRWH 131
                                             6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.48E-74365No hitNo description
SMARTSM003550.134365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576674.48E-7104131No hitNo description
SMARTSM0035511109131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKPSISDFQI PLALRPNQFP LMETNRPQVA SQFDQLAGVL GNYSCKLCNL KCGSKRSLGA  60
HVKAHASNYG FTDSDKIGLK DERERRKEGC RGERKSTTEE TTKHNQQEPV CAMCKKKFHS  120
MKSLFGHMRW HPERDWRGIQ PPEKPILAGK NERNLQVKNS SNGAQMNSVE SLSYHTNSTI  180
TEESSKEHYP LSPLSNWSVI VSGTRRNKTA RSESKDLQR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020520295.11e-115uncharacterized protein LOC18429707
TrEMBLW1NQZ91e-164W1NQZ9_AMBTC; Uncharacterized protein
STRINGERM979331e-164(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP706138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.14e-11C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]