PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00119.48
Common NameAMTR_s00119p00069270
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 213aa    MW: 24117.1 Da    PI: 5.1384
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00119.48genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.7e-112361248
                                             HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             ++++ + lG++ W++Ia +++  Rt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00119.48  2 IIRLQATLGNR-WAAIATYLP-QRTDNDIKNYWNTHL 36
                                             5778899****.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-16137IPR009057Homeodomain-like
SMARTSM007170.0027138IPR001005SANT/Myb domain
CDDcd001673.45E-7136No hitNo description
PROSITE profilePS5129419.748140IPR017930Myb domain
SuperFamilySSF466894.52E-10242IPR009057Homeodomain-like
PfamPF002499.0E-10236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MIIRLQATLG NRWAAIATYL PQRTDNDIKN YWNTHLKKKI KKLQSGIETQ SNPVVLNSCQ  60
LIFRTNWEKK SQNLVNAQYP SHQSSTYASS TENISRLLEG WMRSSPKAQK IEATNEQKPL  120
IFNIRATDSG KHNRVNDENG KSDMISHEDL ESLLSFDSTV LYESPQATIS EELKDAMEIS  180
AQPPLSLLEK WLMDEATVQG EGELVEMSDE VF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258354.12e-48PREDICTED: myb-related protein 306
TrEMBLW1NNE81e-156W1NNE8_AMBTC; Uncharacterized protein
STRINGERM972211e-156(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.14e-38myb domain protein 60
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]