PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00119.54

Common Name

AMTR_s00119p00074870

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ZF-HD

Protein Properties

Length: 155aa MW: 17055.1 Da PI: 9.587

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00119.54	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	92.6	3.4e-29	87	141	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 vrYkeC+kNhAas+Gg++vDGC+Ef++ geegtaaal+CaAC CHRnFH+re++ evm_27.model.AmTr_v1.0_scaffold00119.54 87 LVRYKECRKNHAASVGGYSVDGCREFLAG-GEEGTAAALTCAACSCHRNFHKREED 141 69************************8.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-11	79	149	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.9E-29	88	140	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.2E-24	89	139	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.064	90	139	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MKVGSSTYYK IRAWLLFCSF FPHMPSSSTS TNTQFQKKSK NTGTQAFEDQ QQALESRTNS 60 TSTMRPQEAP KSTSQEPMRI SNGNKKLVRY KECRKNHAAS VGGYSVDGCR EFLAGGEEGT 120 AAALTCAACS CHRNFHKREE DGVCQCSSKS TSKR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931461.2	3e-33	mini zinc finger protein 2
Refseq	XP_020254212.1	4e-33	mini zinc finger protein 2-like
TrEMBL	W1NNC4	1e-111	W1NNC4_AMBTC; Uncharacterized protein
STRING	ERM97227	1e-112	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	2e-16	mini zinc finger 1

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00119.54

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]