PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00122.67
Common NameAMTR_s00122p00129760, LOC18425034
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family BES1
Protein Properties Length: 205aa    MW: 22995.8 Da    PI: 9.8473
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00122.67genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822143.71.7e-4440134396
                                   DUF822   3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkg 72 
                                              + r+p+++ErEnn+ RER+RRa+aa+i+aGLRa+Gny+lp ++D+neVlkALc+eAGw v+dDGttyrk 
  evm_27.model.AmTr_v1.0_scaffold00122.67  40 TLRRPSARERENNRWRERKRRAVAARIFAGLRAYGNYNLPTHSDQNEVLKALCTEAGWHVDDDGTTYRKN 109
                                              679*****************************************************************88 PP

                                   DUF822  73 skpl.eeaeaagssasaspesslqs 96 
                                              +  + ++++ + +s+++++  + + 
  evm_27.model.AmTr_v1.0_scaffold00122.67 110 TIAKsKKPSEMEQSKEVEKADEAKP 134
                                              7666566667777776665555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.3E-4042134IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MENGREERGR NVRGCIKRTA GPWIVRRRKG GSKGDEVAVT LRRPSARERE NNRWRERKRR  60
AVAARIFAGL RAYGNYNLPT HSDQNEVLKA LCTEAGWHVD DDGTTYRKNT IAKSKKPSEM  120
EQSKEVEKAD EAKPDLNLLP HEKPDASASQ LQKIDSPFLI MQQKHGIAGT DVQVKYEDAL  180
QSSKIDSSSG PLESSTEAFL CGFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A7e-1842108372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B7e-1842108372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C7e-1842108372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D7e-1842108372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829668.11e-152protein BZR1 homolog 3
TrEMBLW1NQJ51e-150W1NQJ5_AMBTC; Uncharacterized protein
STRINGERM970841e-151(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP100841011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.61e-18BES1 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]