PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00124.23
Common NameAMTR_s00124p00105750, LOC18425428
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 172aa    MW: 19091.9 Da    PI: 8.6408
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00124.23genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000134668123
                                             EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                             y+C +C++ F ++  L  H++ H
  evm_27.model.AmTr_v1.0_scaffold00124.23 46 YPCMYCDRKFISSQALGGHQNAH 68
                                             99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-64373No hitNo description
Gene3DG3DSA:3.30.160.605.5E-44472IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7834673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MESKSSTSSE LWTRRCPTGP LALALDLTLG GTGLEPEARA LVQRLYPCMY CDRKFISSQA  60
LGGHQNAHKK ERWADQRKNP SSIRHLCNLA PLPSNLFIRS PFVGMDLRAQ MHYWVRPGSA  120
PSYGVGTMPS EPKGGFGLSE EDMTLLGQER KTRIPVDVDH KIEDLDLSLR L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006830040.11e-125zinc finger protein KNUCKLES
TrEMBLW1NNR71e-124W1NNR7_AMBTC; Uncharacterized protein
STRINGERM974561e-125(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.11e-13C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]