PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00127.17
Common NameAMTR_s00127p00060060
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 24885.2 Da    PI: 6.1527
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00127.17genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.6e-29959151
                                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                             k+i+n + rqvtfskRr g++KKA+ELSvLCda+v viifs tgkl+eyss
  evm_27.model.AmTr_v1.0_scaffold00127.17  9 KKIDNATARQVTFSKRRRGLFKKAHELSVLCDAQVGVIIFSATGKLFEYSS 59
                                             68***********************************************96 PP
2K-box57.84.7e-2079171799
                                    K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 
                                              ++  + +    +++l+ L ++  +L + +R++ Ge+L+ L++++Lq+Le+ Le++l+++ s+K e+l+++
  evm_27.model.AmTr_v1.0_scaffold00127.17  79 EDSPSLELHMENRDLSWLSAQAAELTHIIRQMRGEELQGLTIQHLQKLESTLESGLSRVLSRKGEVLMKE 148
                                              45555566677889999***************************************************** PP

                                    K-box  77 ieelqkkekelqeenkaLrkkle 99 
                                              i++lq++e +l een +L++++e
  evm_27.model.AmTr_v1.0_scaffold00127.17 149 IDDLQRQEMKLMEENARLSQQIE 171
                                              *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.249161IPR002100Transcription factor, MADS-box
CDDcd002656.27E-41269No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-32375IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.5886176IPR002487Transcription factor, K-box
PfamPF014861.4E-1789170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAHELSVLCD AQVGVIIFSA TGKLFEYSSS  60
SMEDIVDKYF MDSKNLQKED SPSLELHMEN RDLSWLSAQA AELTHIIRQM RGEELQGLTI  120
QHLQKLESTL ESGLSRVLSR KGEVLMKEID DLQRQEMKLM EENARLSQQI ERMKTTTEMQ  180
QQQGMVVDSE GQSCESMTNT NNSGPYSDSS DTSLKLGGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-21169169MEF2C
5f28_B4e-21169169MEF2C
5f28_C4e-21169169MEF2C
5f28_D4e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020517657.11e-159MADS-box protein JOINTLESS isoform X2
SwissprotQ9FUY63e-79JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLW1NQY51e-159W1NQY5_AMBTC; Uncharacterized protein
STRINGERM973901e-160(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP60761120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-80MIKC_MADS family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]