PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00128.37
Common NameAMTR_s00128p00107690
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family LBD
Protein Properties Length: 105aa    MW: 12289.8 Da    PI: 6.9732
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00128.37genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26035.52.8e-113722998
                                   DUF260 29 kfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
                                             +f  vh+l+G++++ ++l+ + ++++r + ++s +yeA+ar++ P    +++i+ lq+q+++ + el++ +
  evm_27.model.AmTr_v1.0_scaffold00128.37  3 EFIKVHRLYGTHRMRQTLRPItEPTDRATSVESTIYEANARINHPGV-RMNMINMLQEQVKTFEYELNSER 72
                                             7999***************9956777*******************76.689************99998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.6E-10271IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MDEFIKVHRL YGTHRMRQTL RPITEPTDRA TSVESTIYEA NARINHPGVR MNMINMLQEQ  60
VKTFEYELNS ERQIRESLAQ PPLEPPNRRE AFQEQLAHGT DNLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1NPZ88e-71W1NPZ8_AMBTC; Uncharacterized protein
STRINGERM968441e-71(Amborella trichopoda)
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]