PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00129.86

Common Name

AMTR_s00129p00112550, LOC18423995

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ERF

Protein Properties

Length: 246aa MW: 26776.1 Da PI: 7.5734

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00129.86	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.1	2.9e-20	93	142	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg++ taeeAa a+++a+k+++g evm_27.model.AmTr_v1.0_scaffold00129.86 93 SYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYSTAEEAAMAYDEAAKRIRG 142 6******.******954...4***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.18E-22	93	151	IPR016177	DNA-binding domain
SMART	SM00380	5.0E-37	93	156	IPR001471	AP2/ERF domain
Pfam	PF00847	4.1E-14	93	142	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.1E-32	93	151	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.329	93	150	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.8E-11	94	105	IPR001471	AP2/ERF domain
CDD	cd00018	3.59E-32	94	151	No hit	No description
PRINTS	PR00367	3.8E-11	116	132	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MCGGAIISDF IPANRGRRTP NSSDIWSDFN RFLTDNGFGT FYDDEDHGIN GSDSSDDIAS 60 FRQSGSFIGF SGLSKKPMPK KPAKTPTKTR KTSYRGIRRR PWGKWAAEIR DPRKGVRVWL 120 GTYSTAEEAA MAYDEAAKRI RGKKAKLNFP AESKFPAKFP AKPNFPASLP ALDNPKVETQ 180 LEGGVSMESA APQPSDTLVD GCDIFGLNAH VGMEGELAHA LGSGPFVDEM HGGMDLWTFD 240 DFGIM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-21	94	152	15	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:9159183}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269\|PubMed:18836139, ECO:0000269\|PubMed:9159183}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006828652.1	0.0	ethylene-responsive transcription factor RAP2-3
Swissprot	P42736	1e-38	RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBL	W1NKM6	1e-180	W1NKM6_AMBTC; Uncharacterized protein
STRING	ERM96068	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16770.1	3e-27	ethylene-responsive element binding protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00129.86
Entrez Gene	18423995

Publications ? help Back to Top
Bueso E, et al. The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene. Plant J., 2007. 52(6): p. 1052-65 [PMID:17931347] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen YC, et al. Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance. Sci Rep, 2014. 4: p. 5584 [PMID:24998294] Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis. New Phytol., 2015. 208(2): p. 442-55 [PMID:25988998] Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Sci., 2015. 236: p. 37-43 [PMID:26025519] Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Liu W, et al. Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency. Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868 [PMID:28390898] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474]