PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00132.19
Common NameAMTR_s00132p00065700, LOC18421338
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 494aa    MW: 53016.8 Da    PI: 10.0175
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00132.19genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.96.8e-16416468557
                                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                                              +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ e+l ++ +
  evm_27.model.AmTr_v1.0_scaffold00132.19 416 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEENMELQKKQEQLMELRK 468
                                              79**********************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-15409465No hitNo description
SMARTSM003381.6E-15412476IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.645414465IPR004827Basic-leucine zipper domain
CDDcd147073.33E-26416463No hitNo description
SuperFamilySSF579594.0E-11416466No hitNo description
PfamPF001706.8E-14416468IPR004827Basic-leucine zipper domain
PROSITE patternPS000360419434IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MGSHMNFRNL QPDGPDSYHQ QGNNSRMVNN NYADSSNPLA RQPSVYSLTL DEFQNALGGM  60
GKDFGSMNMD EFLKNIWTAE ESQAMALAFE GNLGNSSNNS NLPRQFSLQR QGSLTLPRTL  120
SQKTVDEVWR DLFKESKEGN NGNNAGPALQ QRQQTLGEIT LEEFLVRAGV VREDTQSTAP  180
NPMNNGWYSG SGGNPIGKSG GLALGIQQPT WQNGGGGLLS NNKSQQGVQQ SNSLTNQPTP  240
SQQASWLNSQ YRRSPVVQQQ QQKQPQNHLF RDESQVGFTS TLQLPNNLDL TNPGMGSGLG  300
LSQVGGAGNG LQGRPGVGMV GIGDGSSVNS IGTAAPVGNG FMHGGGLQGG GVGLGLVGLG  360
GGATKNVAAG SPAQLSSDGL GKSNGDNSSL SPTPYIFSGG LRGRKCSGSV EKVVERRQRR  420
MIKNRESAAR SRARKQAYTM ELEAEVQKLK EENMELQKKQ EQLMELRKNQ VLEMTNHEVG  480
PKRCLRRTRT GPW*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628944.10.0bZIP transcription factor TRAB1 isoform X1
RefseqXP_020517416.10.0bZIP transcription factor TRAB1 isoform X1
RefseqXP_020517479.10.0bZIP transcription factor TRAB1 isoform X1
TrEMBLW1NE710.0W1NE71_AMBTC; Uncharacterized protein
STRINGERM934650.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP39841024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.11e-53abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]