PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00133.5

Common Name

AMTR_s00133p00027110

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

bHLH

Protein Properties

Length: 248aa MW: 27347.7 Da PI: 6.6883

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00133.5	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.6	3.5e-11	161	208	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq evm_27.model.AmTr_v1.0_scaffold00133.5 161 SHSIAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 208 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.94E-18	155	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.16E-9	155	212	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.2E-18	157	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.815	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-8	161	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-10	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048446	Biological Process	petal morphogenesis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MDPQQMMSES SSYNLGEIWP FSVNNIGDLN NGGFLQRSPH FPFGEMSNRG DVSVSVEESS 60 VTEQSGGEPP HSRKKRREAA VLDDESSKLV STSSGGDPLQ TGSEGMRLKA LTGSRENSVD 120 LKGEAEASAG NNQDEHKIQP VEPPKQDYIH VRARRGQATD SHSIAERARR EKISERMKIL 180 QDLVPGCNKV IGKALVLDEI INYIQSLQRQ VEFLSMKLEA VNSRMSSGIE GFPAKDFQCL 240 KKKLFVR*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269\|PubMed:16902407}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00207	DAP	Transfer from AT1G59640	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269\|PubMed:16902407}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011622770.1	1e-174	transcription factor bHLH79 isoform X1
Swissprot	Q0JXE7	7e-64	BPE_ARATH; Transcription factor BPE
TrEMBL	W1P9P1	0.0	W1P9P1_AMBTC; Uncharacterized protein
STRING	ERN04404	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	3e-66	BIG PETAL P

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00133.5

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]