PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00135.31
Common NameAMTR_s00135p00067230, LOC18431039
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 379aa    MW: 41596 Da    PI: 5.1118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00135.31genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000133283671054
                                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                              r RRd+i++    Lr+++P      ++  + a +L  A++Y++sL
  evm_27.model.AmTr_v1.0_scaffold00135.31 328 RSRRDKIKKTVGILRKIIPGG----KG-KDAAVVLDDAIRYLRSL 367
                                              89*****************97....23.4679***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.639318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-6324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00209328372No hitNo description
Gene3DG3DSA:4.10.280.104.1E-6328373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGKNYNFDFC GQSPRPLPFM NLSSIPSYGL NPSIEPTTQE YFPSASSPVP DFAVSASPEL  60
KLIDSSGPSS WYYYCQNGSN PFTTFTSNPV EEGTVSLFPH ESRCLDQKPE ASSSNLGAPS  120
RRRSFIVFDQ CGSRRSLFFG SIPSQSQLPD STSPKGFDSS YFRWGPSTGL PNQNLPAIVE  180
RAKAAQGDES KEMSSAGQVS EMHEDTEEIE ALMSSDDEEE TSTGHSPLDM REFEKDKDHY  240
EEYEEEEEEG EEVDSYVSIK RRKIDKMCGG VALGAPHHVS LMDSASSVKG HEKWGSNTGF  300
NSTMGPQFHG KTGTTSGSRC EEEARTKRSR RDKIKKTVGI LRKIIPGGKG KDAAVVLDDA  360
IRYLRSLRLK VKVADAAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841235.10.0transcription factor bHLH143
RefseqXP_011622170.10.0transcription factor bHLH143
TrEMBLW1P7G20.0W1P7G2_AMBTC; Uncharacterized protein
STRINGERN029100.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP576834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-08bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]