PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00135.43
Common NameAMTR_s00135p00085840
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ZF-HD
Protein Properties Length: 232aa    MW: 25288.2 Da    PI: 7.4217
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00135.43genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.53.3e-334498459
                              ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                                              rY+eClkNhA+s+GghavDGCgEfmp+ ge+g+  alkCaACgCHRnFHR+e++ 
  evm_27.model.AmTr_v1.0_scaffold00135.43 44 NRYRECLKNHAVSMGGHAVDGCGEFMPA-GEDGSLGALKCAACGCHRNFHRKESDG 98
                                             69*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015665.3E-304595IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-214597IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.0E-304596IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.9634695IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.0E-17153225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-30158226IPR009057Homeodomain-like
TIGRFAMsTIGR015657.8E-25164220IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDSNDHEDDH EEEEEEEISL PVHPRLKMGS NAEPPQKRTP LTANRYRECL KNHAVSMGGH  60
AVDGCGEFMP AGEDGSLGAL KCAACGCHRN FHRKESDGEI FRQYPHFYGG SVGGPAPYAA  120
AAHRAAPLAL PSSSGGHSRD DEDVSNVPGS GAGHSHGQGL GVIKKRFRTK FSQEQKDKML  180
AFAEKVGWRI QKQDEAEVQR FCAEACVKRH VLKVWMHNNK HTLGKKPPSG S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-241652221875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841247.21e-167zinc-finger homeodomain protein 2
SwissprotA2Z2599e-65ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLW1NZ831e-171W1NZ83_AMBTC; Uncharacterized protein
STRINGERN029221e-172(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-63homeobox protein 22
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]