PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00136.1
Common NameAMTR_s00136p00011480
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family LBD
Protein Properties Length: 276aa    MW: 30535.8 Da    PI: 8.6764
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00136.1genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.97.5e-2911106296
                                  DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearard 71 
                                             CaaC+++rrkC+ dC++apyfp e+ ++f n+h+lFGa nv kll++  ++ ++ + m +++++A+ r+rd
  evm_27.model.AmTr_v1.0_scaffold00136.1  11 CAACRFQRRKCTVDCPFAPYFPPESISEFVNIHRLFGAGNVAKLLDRCrRPFDKAACMGTIIFQANERMRD 81 
                                             **********************************************99556679***************** PP

                                  DUF260  72 PvyGavgvilklqqqleqlkaelal 96 
                                              v G+++ +l+l+ q+++++ +l  
  evm_27.model.AmTr_v1.0_scaffold00136.1  82 RVLGCYRNVLQLNAQVAEARGQLFN 106
                                             *****************99887755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.5349111IPR004883Lateral organ boundaries, LOB
PfamPF031957.6E-3011104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
SNRASNQQQT CAACRFQRRK CTVDCPFAPY FPPESISEFV NIHRLFGAGN VAKLLDRCRR  60
PFDKAACMGT IIFQANERMR DRVLGCYRNV LQLNAQVAEA RGQLFNLLHQ IAMSRQQAVN  120
QVAGGYAYDV AAALQDPHQP IVPEPERARA RAVATIRQWL LVNPQQQQWR PVAASVPPPT  180
DAAVATNFRE ILMLPAPTPA TAAAANAGHG IEEVQENKML PFLWSGGSSM KAGPSRIGEY  240
QDENETPINE KKKEKVEFEE EENPLADAKG KKKLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-191110412104LOB family transfactor Ramosa2.1
5ly0_B4e-191110412104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1NEU20.0W1NEU2_AMBTC; Uncharacterized protein (Fragment)
STRINGERM939610.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-27LOB domain-containing protein 22
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]