PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00137.18
Common NameAMTR_s00137p00051070, LOC18421812
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family LBD
Protein Properties Length: 132aa    MW: 14330.5 Da    PI: 8.0458
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00137.18genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.11.8e-302104198
                                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65 
                                              +C++C+vlr++C+++C+l+ ++      ++q +++ +v+k+FG++ ++++++a+ e++r+d+++sl+yeA
  evm_27.model.AmTr_v1.0_scaffold00137.18   2 SCNGCRVLRKGCSESCMLRSCLqwiegTEAQGHATVFVAKFFGRAGLMSFISAVVENQRPDLFRSLLYEA 71 
                                              6*********************9999888999************************************** PP

                                   DUF260  66 earardPvyGavgvilklqqqleqlkaelallk 98 
                                              + r+ dPv+Gavg+++++++++++++++ +l++
  evm_27.model.AmTr_v1.0_scaffold00137.18  72 CGRTVDPVNGAVGLLWSGNWHICEAAVQSVLRG 104
                                              *************************99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.5411107IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCMLR SCLQWIEGTE AQGHATVFVA KFFGRAGLMS FISAVVENQR  60
PDLFRSLLYE ACGRTVDPVN GAVGLLWSGN WHICEAAVQS VLRGDRIISD LDSQAKKKRS  120
ESPSSFVVEG I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826672.17e-93LOB domain-containing protein 39
SwissprotQ9SZE83e-61LBD39_ARATH; LOB domain-containing protein 39
TrEMBLW1NFC42e-91W1NFC4_AMBTC; Uncharacterized protein
STRINGERM939093e-92(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-63LOB domain-containing protein 39
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]