PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00137.41
Common NameAMTR_s00137p00087340, LOC18421847
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family LBD
Protein Properties Length: 210aa    MW: 22658.8 Da    PI: 7.2647
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00137.41genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260994.6e-312103197
                                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65 
                                              +C++C+vlr++C+++C+l+ ++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA
  evm_27.model.AmTr_v1.0_scaffold00137.41   2 SCNGCRVLRKGCSEGCMLRSCLqwidgAEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEA 71 
                                              6*********************9999888999************************************** PP

                                   DUF260  66 earardPvyGavgvilklqqqleqlkaelall 97 
                                              + r+ +Pv+Gavg++++++++++q+++e++l+
  evm_27.model.AmTr_v1.0_scaffold00137.41  72 CGRTVNPVNGAVGLLWSGNWHVCQAAVEVVLR 103
                                              ***************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.241107IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEGCMLR SCLQWIDGAE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PALFQSLLYE ACGRTVNPVN GAVGLLWSGN WHVCQAAVEV VLRGGTLRPL PEFLAGNIPG  120
NLHYPDDFSE VSTAKDKRVC PKSKEKDEVS ESGEVDLCLG LSHPSTFWPG KRPEKSRPST  180
PSMNSEGSVT CNESGSQLLN EPRVLNLFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826695.11e-154LOB domain-containing protein 38
RefseqXP_011620653.11e-154LOB domain-containing protein 38
SwissprotQ9SN237e-71LBD38_ARATH; LOB domain-containing protein 38
TrEMBLW1NDW01e-152W1NDW0_AMBTC; Uncharacterized protein
STRINGERM939321e-153(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-73LOB domain-containing protein 38
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]