PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00137.53
Common NameAMTR_s00137p00104280, LOC18421827
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 220aa    MW: 23744.4 Da    PI: 8.1502
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00137.53genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000182104123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              ykC+ C+k Fs+   L  H  +H
  evm_27.model.AmTr_v1.0_scaffold00137.53  82 YKCGVCDKAFSSYQALGGHKASH 104
                                              9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.9E-1281106IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-482104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.9382104IPR007087Zinc finger, C2H2
SMARTSM003550.03482104IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.02E-982152No hitNo description
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001128152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.7E-13129154IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577130152IPR007087Zinc finger, C2H2
SMARTSM003550.11130152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MALETLNSAI TFPYPPHTQA ASTSDSDPEA PRSEPWLKRK RTKRTHHRSE EEYLALCLVM  60
LARGGHAFPE PTSNQSEPSL AYKCGVCDKA FSSYQALGGH KASHRKLMGA TADPTSAGSS  120
QRTSGANKVH QCSVCNKMFA SGQALGGHKR CHWDGGVSGS TDGGSSSITG GIRERETGLF  180
DLNLPAQPES WADFRTYYKG HNGDEEVESP LAVKPRLFY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13643LKRKRTKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826707.11e-164zinc finger protein AZF3
TrEMBLW1NFF91e-163W1NFF9_AMBTC; Uncharacterized protein
STRINGERM939441e-163(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.16e-36salt tolerance zinc finger
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]