PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00138.39
Common NameAMTR_s00138p00067840, LOC18421739
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 256aa    MW: 26505.5 Da    PI: 7.7252
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00138.39genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00085113135123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              ++C++C ++F ++  L  H++ H
  evm_27.model.AmTr_v1.0_scaffold00138.39 113 FSCNYCRRRFLSSQALGGHQNAH 135
                                              89**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.63E-6110140No hitNo description
PROSITE profilePS5015711.323113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKSPHIQPET EISSSEGSVV SSQVASNVTT QEASTRSPQD TFSLDLTTSP YNSLAVGHTS  60
LSLDLTLSHP EPARGSGSVP STGESSTEVH FSNPHLGSGS GTGSGSGSEP RVFSCNYCRR  120
RFLSSQALGG HQNAHKRERT LAKRAQRMGS LPARLASLAA LPLRGLGLKA HGLAHGAPAM  180
GVGVAPRFEC RLPVYGEEDG VGFWWPGSFR PGLGPSSSGL GPTTSGLGPM SSGPEAVILV  240
PHEEDSSKPD LTLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826607.10.0zinc finger protein 7
RefseqXP_020517966.10.0zinc finger protein 7
TrEMBLW1NEP20.0W1NEP2_AMBTC; Uncharacterized protein
STRINGERM938440.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.16e-20zinc finger protein 7
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]