PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00142.23
Common NameAMTR_s00142p00045170
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 259aa    MW: 29448 Da    PI: 5.1858
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00142.23genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix422.5e-13283986
                                 trihelix  9 aLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrt...sess 76
                                             +L+ea  e+  + +r++l+   W+evsk++ ++    r+  qC+++++ l+k++k++k++  + +    +ss
  evm_27.model.AmTr_v1.0_scaffold00142.23  2 VLLEAWGERFLQHGRKSLRSDEWAEVSKRVsASSETPRTEAQCRNRLDTLKKKFKREKQRIAEAKalgHTSS 73
                                             789999999999999***************777889**********************99887743447899 PP

                                 trihelix 77 stcpyfdqle 86
                                             s++pyf++++
  evm_27.model.AmTr_v1.0_scaffold00142.23 74 SKWPYFKKMD 83
                                             9********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510299.049190IPR006578MADF domain
PfamPF138371.6E-17285No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVLLEAWGER FLQHGRKSLR SDEWAEVSKR VSASSETPRT EAQCRNRLDT LKKKFKREKQ  60
RIAEAKALGH TSSSKWPYFK KMDRLMSQVS SATPQASPQA PARLACGLDS GEFVFGNPRI  120
CLNPPGDSPE SSDSGSGDSP PPLPKRARVS DWGSDGGSFR LLADSIQRFG EIYEKIENSK  180
RQQMMELERM RMDFQRELEL QKRHIMERAQ AEIAKMREEE EEEEEDEDEE IDVSVTNGYE  240
ESTAQRANCV WGLFVNLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006844357.20.0histone acetyltransferase KAT6A
TrEMBLW1P8210.0W1P821_AMBTC; Uncharacterized protein
STRINGERN060320.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.16e-46Trihelix family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]