PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00149.80
Common NameAMTR_s00149p00097070, LOC18437464
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 217aa    MW: 24336.2 Da    PI: 6.302
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00149.80genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000146284123
                                             EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                             y+C  C + F++   L  H+++H
  evm_27.model.AmTr_v1.0_scaffold00149.80 62 YTCAFCRREFRSAQALGGHMNVH 84
                                             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.78E-65988No hitNo description
PROSITE profilePS5015711.0116289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVSELGFFDS MPDRKPEEKI GLSYGQNPWV WSAKQRNKED DSWEVRAFAQ DTSGPTWPPR  60
SYTCAFCRRE FRSAQALGGH MNVHRRDRAR LLHPSPNPYP NANSLLVTTT QDFPRGLCFL  120
YPIQNPNPNS SPPMFSPNTD PTINSMPTLL SISPHPSDTT HSFPSPSSAQ YFPISASALS  180
HLHNLEHAFM VEAEAPIMEQ EEELDLELRL GVRAAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-135784229superman protein
2l1o_A3e-135784229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847735.11e-161transcriptional regulator SUPERMAN
TrEMBLW1PNM31e-159W1PNM3_AMBTC; Uncharacterized protein
STRINGERN093161e-160(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.17e-29C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]