PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00151.20
Common NameAMTR_s00151p00084810
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 348aa    MW: 38688.3 Da    PI: 9.8017
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00151.20genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-097697426
                                             ---SGGGGTS--TTTTT-SS-SS CS
                                  zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                                             +lC+f+++ G C+ G +CkF+H+
  evm_27.model.AmTr_v1.0_scaffold00151.20 76 VLCQFYMK-GRCNLGLSCKFSHD 97
                                             79******.*************7 PP
2zf-CCCH20.68.1e-07131151525
                                              --SGGGGTS--TTTTT-SS-S CS
                                  zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                              +Cr f ++GtC  Gd+C+F+H
  evm_27.model.AmTr_v1.0_scaffold00151.20 131 PCRVFVANGTCLKGDKCPFSH 151
                                              7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6997299IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-47398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-67397IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-77597IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-47797IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.516101125IPR000571Zinc finger, CCCH-type
SMARTSM003560.75101127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-5103126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.69126154IPR000571Zinc finger, CCCH-type
SMARTSM003560.046128153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-7130168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4131152IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQNHAMHVQN AWHALEEIPE IMDAKESRKR GKHGPLTEER KAKKKLAKKR QRAKKNKELG  60
IKRLKLMPVT KAKPVVLCQF YMKGRCNLGL SCKFSHDTIP LTKSKPCKYL ISNSCLKGQD  120
CPYDHDLSNY PCRVFVANGT CLKGDKCPFS HKMPPPEQLS QVLSCVQETH TPDSKTIPEE  180
KLNTSGSLIG TGHKEWAWGK PFTPPAEVPE GITFFSFGNA PNNNIKQQTR PSPPLEDQGH  240
LDKYMQCVGI FANEHLKTLM PEGNESQNSL AIHKSVSRKL ASKDKYEPER MVGQSNQGSS  300
FHTGVSNMIK SSSESLSSTP INAGKNSNLS KNASQILEEF LFSGTQL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14652AKKRQRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020529202.10.0zinc finger CCCH domain-containing protein 7 isoform X1
RefseqXP_020529208.10.0zinc finger CCCH domain-containing protein 7 isoform X2
TrEMBLW1NK040.0W1NK04_AMBTC; Uncharacterized protein
STRINGERM955150.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81611212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.29e-06C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]