PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00152.26
Common NameAMTR_s00152p00081700
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 263aa    MW: 29336 Da    PI: 9.9322
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00152.26genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.31.2e-16189233448
                                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                                              ++r +r++kNRe+A rsR+RK+a++ eLe +v+ L +eN +L+k 
  evm_27.model.AmTr_v1.0_scaffold00152.26 189 DRRHKRMIKNRESAARSRARKQAYTNELELEVAHLIEENARLRKH 233
                                              789****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-12186248IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.45188232IPR004827Basic-leucine zipper domain
PfamPF001704.4E-13189233IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-11190233No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-14190233No hitNo description
CDDcd147072.78E-24190241No hitNo description
PROSITE patternPS000360193208IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MQIASFYPPD SRLRSLGPGS PVHEMWSVEM NKNGAPALSS TSSSSSSTLH SPPRSNRKTM  60
EDVWRDLNLT LLPRDEGPKG FREMILQDFL TTGNDTRRAQ QDEIHVERRG GPQNVAATNL  120
SLITGSDLHY LDWLSYKPAS AVQEEEQQRP PHVLEPGAAA PFVAPESAAG LGLCKKRLPP  180
DCREEQSVDR RHKRMIKNRE SAARSRARKQ AYTNELELEV AHLIEENARL RKHQLTFANP  240
TAAFQHGKTK PATLRRSTTA PF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624313.20.0bZIP transcription factor 27 isoform X3
TrEMBLW1PKD90.0W1PKD9_AMBTC; Uncharacterized protein
STRINGERN085030.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8739610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.12e-25bZIP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]