PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00155.46

Common Name

AMTR_s00155p00071520

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

NF-YA

Protein Properties

Length: 170aa MW: 18994.1 Da PI: 9.2213

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00155.46	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	107.4	1.2e-33	67	123	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh hAlrR+Rg+gGrF evm_27.model.AmTr_v1.0_scaffold00155.46 67 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IKSRKPYLHESRHLHALRRARGCGGRF 123 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.2E-38	65	126	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	39.038	66	126	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.8E-28	68	123	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.4E-24	69	91	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	71	91	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.4E-24	100	123	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MASPSVEYLM PRSHLEVGHN VQAQPAYPYP DPYYGSLLAA YGAHAVMHPH MMGIHQAGLP 60 LPTDAVEEPV YVNAKQYHGI LRRRQSRAKA ESENKLIKSR KPYLHESRHL HALRRARGCG 120 GRFLNAKTDE DQQNKYEDQQ NNSHHPNNSN SSHNSITLGK EHASAEQAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-21	66	130	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006846016.2	1e-123	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020523901.1	1e-123	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020523902.1	1e-123	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020523904.1	1e-123	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020523905.1	1e-123	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	2e-51	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	W1PJ78	1e-121	W1PJ78_AMBTC; Uncharacterized protein
STRING	ERN07691	1e-122	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-46	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00155.46

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]