PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00155.59
Common NameAMTR_s00155p00086350
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 608aa    MW: 68464.5 Da    PI: 6.1435
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00155.59genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.41.7e-17353386134
                                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                              C +C t kTp+WR+gp+g+ktLCnaCG++y + +
  evm_27.model.AmTr_v1.0_scaffold00155.59 353 CMHCFTEKTPQWRKGPQGPKTLCNACGVRYMSGR 386
                                              99****************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.53347382IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-15347397IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-14349410No hitNo description
Gene3DG3DSA:3.30.50.102.2E-14351383IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.89E-13352393No hitNo description
PfamPF003204.5E-15353387IPR000679Zinc finger, GATA-type
PROSITE patternPS003440353378IPR000679Zinc finger, GATA-type
SuperFamilySSF553153.73E-30456573IPR02906450S ribosomal protein L30e-like
Gene3DG3DSA:3.30.1330.304.9E-26458572IPR02906450S ribosomal protein L30e-like
PfamPF012483.5E-26462555IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45
PROSITE patternPS011890462480IPR000530Ribosomal protein S12e
PRINTSPR009726.1E-27466479IPR000530Ribosomal protein S12e
PRINTSPR009726.1E-27480496IPR000530Ribosomal protein S12e
PRINTSPR009726.1E-27521542IPR000530Ribosomal protein S12e
PRINTSPR009726.1E-27546559IPR000530Ribosomal protein S12e
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005634Cellular Componentnucleus
GO:0022627Cellular Componentcytosolic small ribosomal subunit
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MEDAYFRSSE SLAKVQDSTS LKQEQVTSSM LDKRVEIWRH PCTPLMQEKV KGSMSDKEVE  60
KEQVIGSMLN IEVEKEEVRG SMLDNEVKIW IQPSTPLKQE QVRGFMLDKK LEIWSSDNEP  120
TSVLDAKFSD NSPPHENTSR DMEIWRADNE PTSVLDAKFS DDKAHENTMR DMDLEDNLSS  180
MTDPSYSEPT HHKTLGVKDT NIITTFNFEK EISEMACEKS LRLMRGGDSF SIVLEANPID  240
IQPTSQFTDK NSESPDYKTV NLKSTDSNDI WDFHIPFVKT LRSIAQDDNS YNMFDINTPY  300
PKRLRSSRKP RKFWHLLDAN TSKKQRQFRD RLNKLSISQI MISGESSRFV RRCMHCFTEK  360
TPQWRKGPQG PKTLCNACGV RYMSGRLLPE YRPGDSPTFV PSQHSNSHRK EETLYITPGC  420
TWAATLRGQL HTYTSFPLDE ASNVPAEASG PALGEPMDIM TALQLVLKKS LVHDGIARGL  480
HEAAKVIEKH AAQLCVLAED CDQPDYVKLV RAICADNNVS LITVPSAKTL GEWVGLCKID  540
SEGKARKVVG CSCVVIKDYG EESEGLHIVQ DVLDNRSGPD WVRVRPRLIQ VGLGSGFGLT  600
GVANYAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_BM4e-694415713516640S ribosomal protein S12E
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020523911.10.0uncharacterized protein LOC110007401
TrEMBLW1PJ140.0W1PJ14_AMBTC; 40S ribosomal protein S12
STRINGERN077040.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-31GATA transcription factor 9
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]