PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00159.18
Common NameAMTR_s00159p00052500, LOC18440326
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17934.5 Da    PI: 8.2086
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00159.18genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.51.5e-12345850
                                             HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                                   SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                             nrq tf++R++ ++ KA+ L++ C+a +a++++ss+g+ y ++
  evm_27.model.AmTr_v1.0_scaffold00159.18  3 NRQRTFTNRLKYLFDKAFALCIHCGASIAILVLSSEGEPYAFA 45
                                             9*************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0057147IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.498148IPR002100Transcription factor, MADS-box
PfamPF003191.2E-11244IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-13264IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MNNRQRTFTN RLKYLFDKAF ALCIHCGASI AILVLSSEGE PYAFADQDIV SIINRFIRTQ  60
NNHEPSKTDY PTRPNPFKDE YLQLLKELKI EERLSLALAQ INFGRSGFEG DAEVDSLGLD  120
DLKLLAERVE RLRENVVKRV EEVQKPGGRW ARPLRA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850538.21e-112agamous-like MADS-box protein AGL62
TrEMBLW1PW951e-111W1PW95_AMBTC; Uncharacterized protein
STRINGERN121191e-112(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.41e-11AGAMOUS-like 42
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]