PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00159.24
Common NameAMTR_s00159p00062070
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family AP2
Protein Properties Length: 188aa    MW: 21403.2 Da    PI: 9.0498
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00159.24genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-1381137155
                                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              s y+GV++++++gr++A+++d  ++n  ++k+   g ++ +e Aa+a++ a++k++g
  evm_27.model.AmTr_v1.0_scaffold00159.24  81 SIYRGVTRHRWTGRYEAHLWDkSTWNEnQNKKGKQGAYDEEEAAARAYDLAALKYWG 137
                                              57*******************66666666744455********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.4E-1581146IPR016177DNA-binding domain
PfamPF008472.9E-1081137IPR001471AP2/ERF domain
SMARTSM003802.2E-1982151IPR001471AP2/ERF domain
PROSITE profilePS5103218.46582145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1282146IPR001471AP2/ERF domain
PRINTSPR003671.1E-58394IPR001471AP2/ERF domain
PRINTSPR003671.1E-5127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASTSSVEQQ KKKGVEEEEG GEPPPSSMAT TVKMAKDFSL DHHLRYHLFG GLNKHGKRER  60
GSTAKERISK MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNENQN KKGKQGAYDE  120
EEAAARAYDL AALKYWGPGT LINFPVTDYT RDVEEMQMFS REDYLASLRR KVFVLFLFLE  180
ELLCCSS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526667.11e-101AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK25e-64AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLW1PXH01e-138W1PXH0_AMBTC; Uncharacterized protein
STRINGERN121251e-139(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP91071013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.16e-60AP2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]