PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00160.11

Common Name

AMTR_s00160p00053540

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Dof

Protein Properties

Length: 229aa MW: 25286.2 Da PI: 5.6585

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00160.11	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	97.5	9.3e-31	32	87	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 lkcprCds +tkf yynnys+ qPr++C++C r Wt+GG+lrnvPvG+++rk++k evm_27.model.AmTr_v1.0_scaffold00160.11 32 PLKCPRCDSFDTKFWYYNNYSILQPRHYCRTCCRSWTNGGTLRNVPVGSSSRKRNK 87 689*************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	24.689	33	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-27	33	87	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-18	33	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEQEIGDAAH LLRSSSLFLQ DPEEKSSYKK VPLKCPRCDS FDTKFWYYNN YSILQPRHYC 60 RTCCRSWTNG GTLRNVPVGS SSRKRNKPAE MTMNTTSAQL ETILSQPAPT TYSIAPPAGF 120 GSSFYSFEQG NGYDGTSDQG MLPQQFMGSE SQSHAMNFVG QFGSGFAEQG LPQLGAGLDG 180 MMQYEPTSGW RGERMPAWFD EGVIEKGPSP DSGSLTMPLP VTHYFTYP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W1PSF6	1e-170	W1PSF6_AMBTC; Uncharacterized protein
STRING	ERN10978	1e-171	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38000.1	8e-27	DNA binding with one finger 4.7

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00160.11

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]