PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00160.12

Common Name

AMTR_s00160p00054480

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Dof

Protein Properties

Length: 210aa MW: 22840.3 Da PI: 5.2441

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00160.12	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	39.4	1.3e-12	44	79	25	60
zf-Dof 25 slsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++sqPr+ C++C r t+GG+lrnv +Gg + k+++ evm_27.model.AmTr_v1.0_scaffold00160.12 44 NMSQPRHSCRTCCRSLTNGGTLRNVQLGGNSCKRNR 79 89**************************97666544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-6	33	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-9	43	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MEQEIGDAAY ILGSPSLFLQ DPEEKSRYKK APLECPGGDS FDTNMSQPRH SCRTCCRSLT 60 NGGTLRNVQL GGNSCKRNRP AEMTTNTTSA HIETIFSQPA PTIHSIAPSS GFGSSCYAFE 120 QVNGYDGSRD QQFMGSESLS HAVNFVGEFG SSFAKHCLPQ LGAGLNEMMQ HELTSGWCGE 180 RVLAWFDEGV MERGPSPDFG SLTHYFTYP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W1PSZ9	1e-156	W1PSZ9_AMBTC; Uncharacterized protein
STRING	ERN10979	1e-156	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38000.1	5e-10	DNA binding with one finger 4.7

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00160.12

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]