PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00160.8

Common Name

AMTR_s00160p00038440

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Dof

Protein Properties

Length: 313aa MW: 32393 Da PI: 9.0329

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00160.8	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.4e-39	30	90	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ +kcprCds ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk+k ss evm_27.model.AmTr_v1.0_scaffold00160.8 30 AEQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTRGGTLRNVPVGGGCRKKKPSS 90 67899****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-27	18	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.7E-33	32	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.714	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MQQERERGGG ADMLGCSSRA LQDRRAKPQA EQPQKCPRCD SLNTKFCYYN NYSLSQPRYF 60 CKTCRRYWTR GGTLRNVPVG GGCRKKKPSS KRATEPLTAS PSMVHDPEPV SSPPAAPVDP 120 VASTAGSVSV YYGSDQVGFG GFSGERPSQQ LTALQSMSHA INLGDLGPLF AHRGPQLGGG 180 QGFQLPVFSM GPNGMDPWRI QQREPSGGFG TPQQAMSGSS FDEAAMGGGR GGRVGIAGSG 240 VPSLVVLKTE GASSGRAEWP AAPTEGLFEG AGAASNAASA GGGYWGGGSV SGGWPDLSGY 300 GPPHPPSSTS FL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT034170	4e-33	BT034170.1 Zea mays full-length cDNA clone ZM_BFc0033A15 mRNA, complete cds.
GenBank	BT037300	4e-33	BT037300.1 Zea mays full-length cDNA clone ZM_BFb0161N12 mRNA, complete cds.
GenBank	EU974293	4e-33	EU974293.1 Zea mays clone 445231 hypothetical protein mRNA, complete cds.
GenBank	JX428451	4e-33	JX428451.1 Zea mays subsp. mays clone pUT3045 DOF29 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020525965.1	0.0	dof zinc finger protein DOF3.1
TrEMBL	W1PUI7	0.0	W1PUI7_AMBTC; Uncharacterized protein
STRING	ERN10975	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	7e-34	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00160.8

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]