PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00165.33
Common NameAMTR_s00165p00052010, LOC18440218
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TALE
Protein Properties Length: 845aa    MW: 92441.7 Da    PI: 7.2143
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00165.33genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.62.7e-106346711954
                                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                              Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  evm_27.model.AmTr_v1.0_scaffold00165.33 634 FEHflHPYPTDTDKQMLAKQTGLTRNQVSNWFINARVR 671
                                              554459******************************88 PP
2BELL112.22.8e-36494565172
                                     BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                                              +r+e++kkk+kL+s+l+eV +rYk y++q+q+v+ sFe+vagl +a+pYt+lAl+a+S+hF+cLk+aia+
  evm_27.model.AmTr_v1.0_scaffold00165.33 494 DRAENHKKKTKLVSMLNEVFQRYKLYYNQMQMVMTSFECVAGLSAAAPYTALALRAMSKHFKCLKNAIAD 563
                                              589******************************************************************* PP

                                     BELL  71 qi 72 
                                              q+
  evm_27.model.AmTr_v1.0_scaffold00165.33 564 QL 565
                                              97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.5E-54401563IPR006563POX domain
PfamPF075261.1E-43406562IPR006563POX domain
PROSITE profilePS5007112.438612675IPR001356Homeobox domain
SMARTSM003894.1E-11615679IPR001356Homeobox domain
CDDcd000862.81E-13615676No hitNo description
SuperFamilySSF466892.1E-17617682IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-29618681IPR009057Homeodomain-like
PfamPF059208.5E-19632671IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MSQGFEQGCL GPKVSDHSFL RMNMLRSQPH VAQQSRREKL RVQLNSSSSS PPPSLSQTDT  60
INQGMSHYML NQSRDVNIGA IVPSDLPENC NFSRNFTGIP ALPLCDPNIL QADMSSFAST  120
SDALSPRPNP SGFLPQKPNN PLNSQAQQNC DILMNYAPTS ASASSYGGNN PLFGPSVLGG  180
ILSGSLKEGN FSSSSQLFLL NNPYTTDPNA QSSVHLLNPC SSDLSLNQES QKQFLEIPNM  240
HFPGFHHSSL PVTSSMDCNS SLYGSQINQN LRDPPPQAFL LPTSYANSLQ NIEFKANQQL  300
SVGHDTSGQG LSLSLSSHQP SELHIQDFQS RFGCHNYGPS KAGFFGSHQE DNKGKGEEFY  360
SKQCNNGNIR DYTSFQRFGS GSKGFSGSVH GMGGGPLGPF TGYASILKSS TFLKPAQQLL  420
DEFCNVGQVI QMDGSKARVR GVQGPFERGN GGGGGSSCGV SERGGNPSVS ASSIHHSTET  480
SSEAGVDNPV SSSDRAENHK KKTKLVSMLN EVFQRYKLYY NQMQMVMTSF ECVAGLSAAA  540
PYTALALRAM SKHFKCLKNA IADQLLSTSR ALGEDCTPLS VNKGESTSLR ILDQSLRHQR  600
TVQSSAIIEQ PQHVWRPQRG LPERAVAVLR AWLFEHFLHP YPTDTDKQML AKQTGLTRNQ  660
VSNWFINARV RLWKPMVEEM HMLENKESSA NMDLNSVKNS EEQAAKQAVN SEHQSASSTA  720
PKNEEEDAQQ GHEPKPMKRL RNEELSHHPL NPNPISTEYP SSYQSSEELF PRHSGVGGVS  780
LTLGLRHNGV QDNPFYHQSG QAIEFAAHHH FSGLHESNES EGLQVQNLQL RRHLGTQLLH  840
DFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16621678158Homeobox protein Meis1
4xrs_B2e-16621678158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850433.10.0BEL1-like homeodomain protein 4
TrEMBLW1PW030.0W1PW03_AMBTC; Uncharacterized protein
STRINGERN120140.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.33e-67BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]