PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00182.23
Common NameAMTR_s00182p00043350, LOC18444646
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family DBB
Protein Properties Length: 228aa    MW: 25484.7 Da    PI: 6.9575
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00182.23genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.45.9e-08433534
                                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                                              C+ +e  ++++fC  ++  lC+ C  + H
  evm_27.model.AmTr_v1.0_scaffold00182.23  4 LCDACEGAPAIFFCAADEAALCRACDNKVH 33
                                             7*************************9998 PP
2zf-B_box27.95e-095292238
                                 zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                                             + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g    H+
  evm_27.model.AmTr_v1.0_scaffold00182.23 52 DVPRCDICENSPAFFYCEIDGSSLCLQCDMAVHVGgkrtHE 92
                                             5799*****************************66666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.9E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
CDDcd000211.96E-6347No hitNo description
PfamPF006437.1E-7342IPR000315B-box-type zinc finger
SMARTSM003362.3E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501199.5995196IPR000315B-box-type zinc finger
PfamPF006434.9E-75292IPR000315B-box-type zinc finger
CDDcd000211.10E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRTLCDACEG APAIFFCAAD EAALCRACDN KVHMCNKLAS RHVRVRLADP SDVPRCDICE  60
NSPAFFYCEI DGSSLCLQCD MAVHVGGKRT HERYLLLRQR VEFIGDKPTP IEDHAWQPME  120
KVEYKRDQNM QPHLMMNREG PKENNINHQG PRVPTYDSNA NNDKHDAKLI DLNARPHRNQ  180
GQPSNSSQKS SGMDTANNRD CASLVPVGSF KREVARNSVA DAKDVDM*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854872.11e-171B-box zinc finger protein 19 isoform X1
RefseqXP_011627234.11e-171B-box zinc finger protein 19 isoform X1
RefseqXP_011627235.11e-171B-box zinc finger protein 19 isoform X1
SwissprotC0SVM56e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLU5D1M91e-169U5D1M9_AMBTC; Uncharacterized protein
STRINGERN163391e-170(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-75DBB family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]