PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00184.23

Common Name

AMTR_s00184p00048850

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

bHLH

Protein Properties

Length: 269aa MW: 30079.5 Da PI: 4.8601

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00184.23	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.6e-10	128	171	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL ++eY ++L evm_27.model.AmTr_v1.0_scaffold00184.23 128 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIEYTREL 171 479*******************66......************7766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.96E-5	120	182	No hit	No description
PROSITE profile	PS50888	14.678	122	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-14	125	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-11	128	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-8	128	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-14	129	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	7.89E-4	219	260	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MELHHPIQED NAFQEEFLAL RREVWDIFPP ENDGIFSLFE NPIVSPPPIP QENGGFFPID 60 DDLAMGLIQQ DYVFDTGIQV PSTISFPENP MTHAFGVVNE QKLGEVPELV AGPVRGVGGE 120 KKCASKNLMA ERRRRKRLND RLSMLRSVVP KISKMDRTSI LGDTIEYTRE LLGRLKSLQE 180 EVDVNGLNLL TIFHQLQHNN AEEKRSTPKF DVEKRGSVTR IEVCCGGKPG LLHSTLNTME 240 ALGLEIQQCV MSCFGDFVMQ ALCLEGIS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	137	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011625580.1	0.0	transcription factor bHLH93
Swissprot	Q9LSL1	4e-47	BH093_ARATH; Transcription factor bHLH93
TrEMBL	W1PV58	0.0	W1PV58_AMBTC; Uncharacterized protein
STRING	ERN11973	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2636	11	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-49	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00184.23

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]