PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00185.22
Common NameAMTR_s00185p00053640
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family BBR-BPC
Protein Properties Length: 198aa    MW: 21705.2 Da    PI: 10.5813
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00185.22genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind74.44.5e-2311921180
                                GAGA_bind   1 mdddgsre.rnkg.yye..........paaslkenlglqlmssiaerdakirernlalsekkaavaerdm 58 
                                              md+   ++ r+k+ +y+          p++s+k++ +++lm+++aerda+i+ern+als+k+aa+aerd 
  evm_27.model.AmTr_v1.0_scaffold00185.22   1 MDEGQRENgRHKPdQYKamlghsqwnaPQQSMKDHPAFKLMALMAERDAAIQERNAALSDKRAALAERDL 70 
                                              777777779****99*9******9998779**************************************** PP

                                GAGA_bind  59 aflqrdkalaernkalverdnkllalllvensla.salpvg.vqvlsgtksidslqqlsepqledsavel 126
                                              a  qrd+a aern al erd +++al+++++  + + +p+g  ++++ +  ++   + s p  +d++++ 
  evm_27.model.AmTr_v1.0_scaffold00185.22  71 AISQRDAAYAERNTALQERDAAIAALEYARDYGMgTGQPQGpPGAMPRAPRAHVDPNSSYPP-RDNSQP- 138
                                              ***************************98876555666665245666766666555533333.333333. PP

                                GAGA_bind 127 reeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180
                                              ++++ +ea+pi+++++  + k+k+ kr r++ + +  +++kk  ++ +++++k+
  evm_27.model.AmTr_v1.0_scaffold00185.22 139 NHHNVTEAYPISSSEPALNVKPKRAKRPRKEGANKAPHQAKKAGGPRQRRSKKQ 192
                                              355678899999988887766666655555544444444444445555554443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.4E-51196IPR010409GAGA-binding transcriptional activator
PfamPF062171.5E-1312182IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDEGQRENGR HKPDQYKAML GHSQWNAPQQ SMKDHPAFKL MALMAERDAA IQERNAALSD  60
KRAALAERDL AISQRDAAYA ERNTALQERD AAIAALEYAR DYGMGTGQPQ GPPGAMPRAP  120
RAHVDPNSSY PPRDNSQPNH HNVTEAYPIS SSEPALNVKP KRAKRPRKEG ANKAPHQAKK  180
AGGPRQRRSK KQGGSMT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852993.31e-136LOW QUALITY PROTEIN: barley B recombinant-like protein D
TrEMBLU5CWY41e-140U5CWY4_AMBTC; Uncharacterized protein
STRINGERN144601e-141(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.13e-25basic pentacysteine 6
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]