PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00197.11
Common NameAMTR_s00197p00030350, LOC18446844
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SBP
Protein Properties Length: 830aa    MW: 93917.2 Da    PI: 7.1832
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00197.11genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.23.6e-36129205177
                                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT--- CS
                                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhn 70 
                                              +Cqv +Cead+se+k yhrrh+vC  +++a++v+++g+ +r+CqqC++fh l++fDe+krsCrr+L++hn
  evm_27.model.AmTr_v1.0_scaffold00197.11 129 RCQVTDCEADISELKGYHRRHRVCLRCANATTVILDGQPKRYCQQCGKFHVLQDFDEGKRSCRRKLERHN 198
                                              6********************************************************************* PP

                                              ----S-- CS
                                      SBP  71 errrkkq 77 
                                              +rrr+k+
  evm_27.model.AmTr_v1.0_scaffold00197.11 199 NRRRRKN 205
                                              ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-28125191IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.171127204IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-33128208IPR004333Transcription factor, SBP-box
PfamPF031104.6E-27130204IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MEVGWEWSNL LLDDFSSIDG DAPSLPSEAA PYCSDWDALP LPSEDPQPQS MPQPEPSSAT  60
SSVLLPHSSP LNPQTSSPAK VRKRDPRLTC SNFLTGHIPC ACPELDEQER DEDEASRKRT  120
KMTAAAVVRC QVTDCEADIS ELKGYHRRHR VCLRCANATT VILDGQPKRY CQQCGKFHVL  180
QDFDEGKRSC RRKLERHNNR RRRKNLDFRH GVEGSHLTEK EPLSIMTIED VFCNGEAGSG  240
LGDGCGEASL HLSDQMKDTN TRSLLECEEG HESPFHSVMG KMNPSLQNPQ SDDVLSIVTS  300
DKAQRKSGND HSRPSLSSSL CDNQAGYSSV CPTGRISFKL YDWNPAEFPR RLRHQIFQWL  360
ASMPVELEAY IRPGCTILTV FIAMPHFMWE KLFKDATVFL DDLVNAPGSL LSGRGRIFIY  420
LNNWIFQVLR GGTSLANNMM DMRVPKLHYV HPVCFQAGKP MEFVACGRNL FQNKFRFLVS  480
FAGKYLQYDS CQAISLEETK SFRGIGGSFI HCSDTEMFKI RIPSTDPKLF GPVFIEVENV  540
SGISNFIPVL LGDKWTCSEL QNFELMLGEA VCHEYDNNFV MNAACRSSNI ADSDKKCFSE  600
LLLDIAWLLK EPHFDHDRNE TELNSMHFER WSCLLRFLVR NGLVFVLEKV LKSPMVLMKL  660
EESENQTSDV DMRLFRKYVN QARELVDQQN KRGRLRLRSK NITSQGSSPP TRDINANILN  720
DKHCTNQEMG SKGERDHEKS IATYLVQGGD MRTPLLSKEV VMRVNHSPCP IERPRFYPSA  780
GIIVSPRLFL IVLGAVVMCC GVCIVLRHPH EVWEFSISLR RCLTGTPKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-40125207183squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190202RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857011.10.0squamosa promoter-binding-like protein 7
TrEMBLU5DDJ10.0U5DDJ1_AMBTC; Uncharacterized protein
STRINGERN184780.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP48281320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.31e-177squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]