PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00210.5
Common NameAMTR_s00210p00022040
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 131aa    MW: 15240.8 Da    PI: 4.3472
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00210.5genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM301.5e-0947154128
                                     NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmh 124
                                             +e+ewyfF+++ +       ++  t++g W+   + ke+++++++  g + tL++   ++p+ + t+W ++
  evm_27.model.AmTr_v1.0_scaffold00210.5   4 KEDEWYFFATTTRLP-----NECLTTTGHWRDISQAKEIFDRRDRYLGSRFTLTLIL-DNPR-QDTEWYLD 67 
                                             5689*****987753.....3447889*****************************5.5555.69****** PP

                                     NAM 125 eyrl 128
                                             e++l
  evm_27.model.AmTr_v1.0_scaffold00210.5  68 EFHL 71 
                                             **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.9681107IPR003441NAC domain
SuperFamilySSF1019412.75E-113107IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MVYKEDEWYF FATTTRLPNE CLTTTGHWRD ISQAKEIFDR RDRYLGSRFT LTLILDNPRQ  60
DTEWYLDEFH LSSEIPQRNG TFIHSNQDTT QSLPSSPLLV LCKIYKEEDY CDSQSGTPLE  120
TENLGSVFDA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006830665.21e-37NAC transcription factor 56
TrEMBLW1NTX32e-92W1NTX3_AMBTC; Uncharacterized protein
STRINGERM980793e-93(Amborella trichopoda)
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]