PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00210.6
Common NameAMTR_s00210p00022930
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 104aa    MW: 11662.7 Da    PI: 4.6782
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00210.6genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.62.8e-113075249
                                     NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                                            p+G+rF P+deel+ +yL+ +  g +l++ ++i e d+y+++Pw+Lp 
  evm_27.model.AmTr_v1.0_scaffold00210.6 30 PMGVRFCPSDEELM-YYLAWRHLGVPLPT-NFILEEDLYHLDPWELPD 75
                                            89************.*************9.89**************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-142477IPR003441NAC domain
PROSITE profilePS5100512.25129103IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MASNGTANGA GIPRPPPGPP QPFMLHVRFP MGVRFCPSDE ELMYYLAWRH LGVPLPTNFI  60
LEEDLYHLDP WELPDMPASF CNVEGRLLLI LLLLVVMKDI FQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006830665.23e-15NAC transcription factor 56
TrEMBLW1NT255e-69W1NT25_AMBTC; Uncharacterized protein
STRINGERM980808e-70(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-11NAC domain containing protein 25
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]