PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00213.2
Common NameAMTR_s00213p00014190
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NF-YC
Protein Properties Length: 190aa    MW: 21929.4 Da    PI: 5.6346
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00213.2genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC143.45.3e-4569611101
                                   NF-YC  11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 
                                             ++ ++f++h+lPlarikki+k+d+dvkmisae+P+l++kacelfileltlr+wlh+ee+krrtl++sdia 
  evm_27.model.AmTr_v1.0_scaffold00213.2   6 QHIHEFRQHQLPLARIKKIMKSDDDVKMISAETPILFAKACELFILELTLRAWLHTEECKRRTLQRSDIAG 76 
                                             67889****************************************************************** PP

                                   NF-YC  82 avtrtdifdflvdivprdel 101
                                             a+   ++ dflvd+vp +e 
  evm_27.model.AmTr_v1.0_scaffold00213.2  77 AIRAGEVLDFLVDVVPMEEF 96 
                                             ****************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.02E-27796IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.8E-35979IPR009072Histone-fold
PfamPF008081.7E-191578IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVKGTQHIHE FRQHQLPLAR IKKIMKSDDD VKMISAETPI LFAKACELFI LELTLRAWLH  60
TEECKRRTLQ RSDIAGAIRA GEVLDFLVDV VPMEEFRGVQ PFLCMQDDQF GVNWSGNESL  120
PYSGMQFPKM NPRPFNQILP EDVTSRQHEI PQQMMLQQPF FSNSVMYDPP QVDNKRVEWL  180
IVQGIEALT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-39392594NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571RRTLQRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020520742.11e-118nuclear transcription factor Y subunit C-6
RefseqXP_020520743.11e-118nuclear transcription factor Y subunit C-6
TrEMBLW1P4841e-139W1P484_AMBTC; Uncharacterized protein
STRINGERN024691e-139(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-44nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]