PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00224.2
Common NameAMTR_s00224p00009210, LOC18429885
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TCP
Protein Properties Length: 157aa    MW: 17448 Da    PI: 10.3659
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00224.2genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP58.92.1e-18481352085
                                     TCP  20 RRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................sss 68 
                                              R Rlsa++a++f+dLq +LG+ + sk ++WL++ ak ai+el+++                         
  evm_27.model.AmTr_v1.0_scaffold00224.2  48 QRFRLSAHTAIKFYDLQVSLGYNRFSKGVDWLITRAKSAIDELAELptwqpttvkppkpttgtsltktR-- 116
                                             599*******************************************66555544433332222222110.. PP

                                     TCP  69 sa.sec.eaesssssasns 85 
                                             ++ s++ ++ +++ s+s+s
  evm_27.model.AmTr_v1.0_scaffold00224.2 117 ASlSSSlKPITQNLSHSHS 135
                                             1111111222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136912.6313090IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-1549132IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MENIFVHLNL MNNFSVSPEL WKMFGGIKLQ KSRPESQHCS ISSVWFAQRF RLSAHTAIKF  60
YDLQVSLGYN RFSKGVDWLI TRAKSAIDEL AELPTWQPTT VKPPKPTTGT SLTKTRASLS  120
SSLKPITQNL SHSHSSIAAQ SNPPSSFLLP PMETES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011626273.18e-42transcription factor TCP4
TrEMBLW1P2I21e-110W1P2I2_AMBTC; Uncharacterized protein
STRINGERN017811e-111(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-17TCP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]