PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00349.2
Common NameAMTR_s00349p00012820
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family FAR1
Protein Properties Length: 130aa    MW: 15014.6 Da    PI: 5.3109
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00349.2genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.42e-1260125162
                                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgC 62 
                                             kfYn+YA++ GFs+r  + +k k+n+   kr++vC k gk+++++++     ++ + ++++  ++gC
  evm_27.model.AmTr_v1.0_scaffold00349.2  60 KFYNAYAERKGFSIRLVRPRKDKDNN-LRKRDYVCLKDGKNSSSTNNkgrmqSNVKGTQNERGKVGC 125
                                             6*****************99996666.****************999966554444444666667777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-1060125IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDQDEFYKNK FMDVSYDNVI ATGDGEDIEV PLFCDQQNNS EHQKDLFIGM DFEYEDVVNK  60
FYNAYAERKG FSIRLVRPRK DKDNNLRKRD YVCLKDGKNS SSTNNKGRMQ SNVKGTQNER  120
GKVGCNEIC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1NQK11e-89W1NQK1_AMBTC; Uncharacterized protein
STRINGERM980722e-90(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-07FAR1-related sequence 10
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]