PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold04408.1
Common NameAMTR_s04408p00000200, LOC18436559
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 270aa    MW: 30179.6 Da    PI: 5.3986
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold04408.1genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.31.8e-09236269538
                                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 
                                             kr +r   NR +A+rsR RK+++i eLe+ v +L
  evm_27.model.AmTr_v1.0_scaffold04408.1 236 KRMKRILANRQSAQRSRVRKLQYISELERSVNAL 269
                                             899****************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502178.967234270IPR004827Basic-leucine zipper domain
PfamPF001707.3E-8236269IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-8236270No hitNo description
SuperFamilySSF579599.64E-8236269No hitNo description
CDDcd147033.69E-17237270No hitNo description
PROSITE patternPS000360239254IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDQSNNNISG LPWGFNSKLS QQPPKGPQLS NNLNPRPSQP WANLSQQNPA SKHHRTPTFI  60
GVIPQGQSSW LHDDFMDLEG PLKRVLHRRS ASDSLAFIDV DPNEFECRSS GATSLQSKSE  120
YQDFERLDDA ENLMLMLDEI EPFQKQQSSG QSPMDIRLSE GHLLVSTSEN PSTPSDNNSI  180
NEPYVEKAVM APGQIKSEQE VQSACKTEEI TPLLSKPVAD ASPSTNVGLD MNLDPKRMKR  240
ILANRQSAQR SRVRKLQYIS ELERSVNALQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006846848.20.0basic leucine zipper 2, partial
TrEMBLU5CVF50.0U5CVF5_AMBTC; Uncharacterized protein (Fragment)
STRINGERN084290.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.13e-25bZIP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]