PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_kg.24_#_12_#_3604_1_CBOZ_CBPA
Common NameCOCSUDRAFT_34541
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bZIP
Protein Properties Length: 171aa    MW: 18869 Da    PI: 10.4253
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_kg.24_#_12_#_3604_1_CBOZ_CBPAgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.9e-1189147361
                                             XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                  bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                                             el+ +rr+ kNR  A +sR+RK+ e++ L   v +Lea N+ L++ l + + e  +l+ 
  fgenesh1_kg.24_#_12_#_3604_1_CBOZ_CBPA  89 ELRLQRRLVKNRRTAAASRERKQRELDDLHVNVRALEADNQGLRQALRQRESELRSLRV 147
                                             899*****************************************999999988888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.9E-1084148No hitNo description
SMARTSM003381.1E-587151IPR004827Basic-leucine zipper domain
PfamPF001701.3E-988146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.07189152IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.69E-791147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MQPSNDGSGS RTCHTQAQER CQQAPRRHYP PAAAFREGTG PDRCRGSGDA SSQEAAEGTE  60
VSDSESPKRR RGKRKLPEVD YSAIEDPAEL RLQRRLVKNR RTAAASRERK QRELDDLHVN  120
VRALEADNQG LRQALRQRES ELRSLRVHMA SIQGSAPLPT PAPLLPGFPA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16673PKRRRGKR
26874RRRGKRK
36875RRRGKRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005642894.11e-119hypothetical protein COCSUDRAFT_34541
TrEMBLI0YIY11e-118I0YIY1_COCSC; Uncharacterized protein
STRINGXP_005642894.11e-119(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP577378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.17e-06ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]