PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_kg.2_#_60_#_3265_1_CBOZ_CBPA

Common Name

COCSUDRAFT_32175

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 216aa MW: 22314.2 Da PI: 8.2416

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_kg.2_#_60_#_3265_1_CBOZ_CBPA	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.6	1.1e-07	156	208	10	62
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 k+kNR A+rr+R+R k i L+e+ ++L+++ ++ k +e+++ke++ lk fgenesh1_kg.2_#_60_#_3265_1_CBOZ_CBPA 156 KEKNRAAQRRFRERQKGLISALKEREETLSKQCEEQKRLIETMQKEIQVLKEI 208 79**********************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0064	149	211	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.56E-7	156	208	No hit	No description
CDD	cd14686	4.16E-8	156	203	No hit	No description
PROSITE pattern	PS00036	0	156	169	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-6	156	209	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MMQQQQQQRS NPGDWAPFLA ALAGADPQQI APILAAILPK PNGGAAAAGQ DAEGRAGIAG 60 LRAAAQAQGG EGSAEGAPAF TELAGRVFPG KPEGDAAASA SAPKEAMQID TASLLPLLQL 120 TQPHLSLGGD AGHQSAGDSG QAGLSQAGGG VAKCAKEKNR AAQRRFRERQ KGLISALKER 180 EETLSKQCEE QKRLIETMQK EIQVLKEIIH SKDPK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005651015.1	1e-150	hypothetical protein COCSUDRAFT_32175
TrEMBL	I0Z752	1e-148	I0Z752_COCSC; Uncharacterized protein
STRING	XP_005651015.1	1e-149	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7936	4	5

Link Out ? help Back to Top
Entrez Gene	17044481

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]